| Issue Date | Title | Author(s) | Type | М-cat. |
| 2014 | Towards Accurate Transcription Start Site Prediction: a modelling approach | Đorđević, Marko   | Book parts | |
| 2014 | Modeling CRISPR/Cas Regulation: Analysis of an Advanced Bacterial Immune System | Đorđević, Magdalena ; Đorđević, Marko | Conference Paper | |
| 2014 | Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C | Zukher, Inna; Novikova, Maria; Tikhonov, Anton; Nesterchuk, Mikhail V.; Osterman, Ilya A.; Đorđević, Marko ; Sergiev, Petr V.; Sharma, Cynthia M.; Severinov, Konstantin | Article | |
| 2014 | Integrating sequence analysis with biophysical modelling for accurate transcription start site prediction | Đorđević, Marko | Article | |
| 2013 | Efficient transcription initiation in bacteria: An interplay of protein-DNA interaction parameters | Đorđević, Marko | Article | |
| 2013 | Modeling bacterial immune systems: Strategies for expression of toxic - but useful - molecules | Đorđević, Marko | Article | |
| 2012 | A simple biosynthetic pathway for large product generation from small substrate amounts | Đorđević, Marko ; Đorđević, Magdalena | Article | |
| 2012 | Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32 | Pavlova, Olga; Lavysh, Daria; Klimuk, Evgeny; Đorđević, Marko ; Ravcheev, Dmitry A.; Gelfand, Mikhail S.; Severinov, Konstantin; Akulenko, Natalja | Article | |
| 2012 | Generalization of radiative jet energy loss to non-zero magnetic mass | Đorđević, Magdalena ; Đorđević, Marko | Article | |
| 2012 | CRISPR transcript processing: A mechanism for generating a large number of small interfering RNAs | Đorđević, Marko ; Đorđević, Magdalena ; Severinov, Konstantin | Article | |
| 2012 | CRISPR Transcript Processing: An Unusual Mechanism for Rapid Production of Desired Molecules (✓) | Djordjevic, Marko ; Severinov, Konstantin; Djordjevic, Magdalena | Book parts | |
| 2011 | Redefining Escherichia coli σ(70) promoter elements: -15 motif as a complement of the -10 motif | Đorđević, Marko | Article | |
| 2010 | Inferring Protein–DNA Interaction Parameters from SELEX Experiments | Đorđević, Marko | Monograph | |
| 2010 | Transcription, processing and function of CRISPR cassettes in Escherichia coli | Pougach, Ksenia; Semenova, Ekaterina; Bogdanova, Ekaterina; Datsenko, Kirill A.; Đorđević, Marko ; Wanner, Barry L.; Severinov, Konstantin | Article | |
| 2008 | Formation of the open complex by bacterial RNA polymerase - A quantitative model | Đorđević, Marko ; Bundschuh, Ralf | Article | |
| 2008 | Transcription regulation of the type II restriction-modification system AhdI | Bogdanova, Ekaterina; Đorđević, Marko ; Papapanagiotou, Ioanna; Heyduk, Tomasz; Kneale, Geoff; Severinov, Konstantin | Article | |
| 2007 | Temporal Regulation of Viral Transcription during Development of Thermus thermophilus Bacteriophage φ{symbol}YS40 | Sevostyanova, Anastasiya; Đorđević, Marko ; Kuznedelov, Konstantin; Naryshkina, Tatyana; Gelfand, Mikhail S.; Severinov, Konstantin; Minakhin, Leonid | Article | |
| 2007 | SELEX experiments: New prospects, applications and data analysis in inferring regulatory pathways (✓) | Djordjevic, Marko | Article | |
| 2006 | Quantitative modeling and data analysis of SELEX experiments | Đorđević, Marko ; Sengupta, Anirvan M. | Article | |
| 2006 | Quantitative analysis of a virulent bacteriophage transcription strategy | Đorđević, Marko ; Semenova, Ekaterina; Shraiman, Boris; Severinov, Konstantin | Article | |
Đorđević, Marko