| Issue Date | Title | Author(s) | Type | Мp-cat. |
| 2006 | Comment on “Acidity of a Cu-bound Histidine in the Binuclear Center of Cytochrome c Oxidase” | Stuchebrukhov, A. A.; Popović, Dragan M.  | Article | |
| 2006 | PHYS 221-Coupled electron transfer: Proton transfer reactions and proton pumping mechanism of cytochrome c oxidase | Popovic, Dragan M. ; Stuchebrukhov, Alexei A. | Conference Paper | |
| 2006 | Two conformational states of Glu242 and pKas in bovine cytochrome c oxidase | Popovic, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2006 | Combined DFT and electrostatic calculations of pKas in proteins: study of cytochrome c oxidase | Popović, Dragan M. ; Quenneville, Jason; Stuchebrukhov, Alexei A. | Book parts | |
| 2006 | Combined DFT and electrostatics study of the proton pumping mechanism in cytochrome c oxidase | Quenneville, Jason; Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2006 | Improved Density Functional Theory/Electrostatic Calculation of the His291 Protonation State in Cytochrome c Oxidase: Self-Consistent Charges for Solvation Energy Calculation | Makhov, D. V.; Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2006 | PHYS 589-An efficient procedure for computing redox potentials in QM/MM method | Makhov, Dmitry V.; Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Conference Paper | |
| 2006 | INOR 254-Proton pumping mechanism of cytochrome c oxidase: Electron-coupled proton transfer reactions | Popovic, Dragan M. ; Stuchebrukhov, Alexei A. | Conference Paper | |
| 2005 | Proton Exit Channels in Bovine Cytochrome c Oxidase | Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2005 | DFT/Electrostatic Calculations of pKa Values in Cytochrome c Oxidase | Popović, Dragan M. ; Quenneville, Jason; Stuchebrukhov, Alexei A. | Article | |
| 2005 | Combined Density Functional Theory ( DFT ) and Electrostatics Study of the Proton Pumping Mechanism in Cytochrome C Oxidase | Quenneville, Jason; Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Book parts | |
| 2004 | Redox-Dependent pKa of CuB Histidine Ligand in Cytochrome c Oxidase | Quenneville, Jason; Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2004 | Proton pumping mechanism and catalytic cycle of cytochrome c oxidase: Coulomb pump model with kinetic gating | Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2004 | Electrostatic Study of the Proton Pumping Mechanism in Bovine Heart Cytochrome c Oxidase | Popović, Dragan M. ; Stuchebrukhov, Alexei A. | Article | |
| 2002 | Synthetic cytochrome b: Computer modeling and evaluation of redox potentials | Knapp, E. W.; Popović, Dragan M. ; Zarić, Snežana D.  | Conference Paper | |
| 2002 | Energetics of radical transfer in DNA photolyase | Popovic, DM ; Zmiric, A; Zarić, Snežana D. ; Knapp, EW | Article | |
| 2001 | Factors determining the orientation of axially coordinated imidazoles in heme proteins | Zarić, Snežana D. ; Popovic, DM ; Knapp, EW | Article | |
| 2001 | Artificial cytochrome b: Computer modeling and evaluation of redox potentials | Popovic, DM ; Zarić, Snežana D. ; Rabenstein, B; Knapp, EW | Article | |
| 2000 | Metal ligand aromatic cation-pi interactions in metalloproteins: Ligands coordinated to metal interact with aromatic residues | Zarić, Snežana D. ; Popovic, DM ; Knapp, EW | Article | |